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Apply all available tree statistics to a single tree, but exclude those statistics that require large amounts of memory.

Source: R/calc_all_stats_large_tree.R
calc_all_stats_large_tree.Rd

this function applies all tree statistics available in this package to a single tree, excluding statistics that require large amounts of memory, because they are based on a distance matrix. The statistics EXCLUDED are:

  • laplacian spectrum

  • variance of pairwise distance (vpd)

  • maximum eigen vector value

  • minimum eigenvalue of the Laplacian matrix

  • maximum eigenvalue of the Laplacian matrix

  • minimum eigenvalue of the adjacency matrix

  • maximum eigenvalue of the adjacency matrix

Usage

calc_all_stats_large_tree(phylo, normalize = FALSE)

Arguments

phylo

phylo object

normalize

if set to TRUE, results are normalized (if possible) under either the Yule expectation (if available), or the number of tips

Value

List with statistics